IL_6CFJ_317
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAC*GUUCCC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFJ_317 not in the Motif Atlas
- Homologous match to IL_6CZR_149
- Geometric discrepancy: 0.1717
- The information below is about IL_6CZR_149
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93211.1
- Basepair signature
- cWW-cWS-cWW-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6CFJ|1|2a|G|933
6CFJ|1|2a|C|934
6CFJ|1|2a|A|935
6CFJ|1|2a|C|936
*
6CFJ|1|2a|G|1379
6CFJ|1|2a|U|1380
6CFJ|1|2a|U|1381
6CFJ|1|2a|C|1382
6CFJ|1|2a|C|1383
6CFJ|1|2a|C|1384
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2g
- 30S ribosomal protein S7
- Chain 2i
- 30S ribosomal protein S9
- Chain 2x
- Transfer RNA; tRNA
- Chain 2y
- Transfer RNA; tRNA
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