IL_6CFJ_321

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_321 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.162

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6CFJ|1|2a|G|1050
6CFJ|1|2a|C|1051
6CFJ|1|2a|U|1052
*
6CFJ|1|2a|G|1206
6CFJ|1|2a|2MG|1207
6CFJ|1|2a|C|1208

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2n

30S ribosomal protein S14 type Z

Chain 2w

Transfer RNA; tRNA