IL_6CFJ_353

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6CFJ|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_353 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1241

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6CFJ|1|2A|C|844
6CFJ|1|2A|G|845
6CFJ|1|2A|C|846
6CFJ|1|2A|U|847
6CFJ|1|2A|G|848
6CFJ|1|2A|A|849
6CFJ|1|2A|C|850
*
6CFJ|1|2A|G|927
6CFJ|1|2A|G|928
6CFJ|1|2A|U|930
6CFJ|1|2A|G|931
6CFJ|1|2A|G|932
6CFJ|1|2A|A|933
6CFJ|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30