IL_6CFK_050
3D structure
- PDB id
- 6CFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GCAAU*AGC
- Length
- 8 nucleotides
- Bulged bases
- 6CFK|1|1A|G|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFK_050 not in the Motif Atlas
- Homologous match to IL_7RQB_051
- Geometric discrepancy: 0.0464
- The information below is about IL_7RQB_051
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.6
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
6CFK|1|1A|G|1365
6CFK|1|1A|C|1366
6CFK|1|1A|A|1367
6CFK|1|1A|A|1368
6CFK|1|1A|U|1369
*
6CFK|1|1A|A|1377
6CFK|1|1A|G|1378
6CFK|1|1A|C|1379
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1W
- 50S ribosomal protein L22
- Chain 1X
- 50S ribosomal protein L23
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