IL_6CFK_054

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6CFK|1|1A|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_054 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0507

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6CFK|1|1A|C|1463
6CFK|1|1A|G|1464
6CFK|1|1A|A|1465
6CFK|1|1A|U|1466
6CFK|1|1A|G|1467
*
6CFK|1|1A|C|1624
6CFK|1|1A|U|1625
6CFK|1|1A|A|1626
6CFK|1|1A|A|1627
6CFK|1|1A|G|1628

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains