IL_6CFK_062

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6CFK|1|1A|C|1590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_062 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.045

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6CFK|1|1A|G|1572
6CFK|1|1A|G|1573
6CFK|1|1A|A|1574
6CFK|1|1A|A|1575
6CFK|1|1A|G|1576
*
6CFK|1|1A|U|1587
6CFK|1|1A|G|1588
6CFK|1|1A|A|1589
6CFK|1|1A|C|1590
6CFK|1|1A|A|1591
6CFK|1|1A|A|1592
6CFK|1|1A|C|1593

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains