IL_6CFK_084

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_084 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.3325

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6CFK|1|1A|G|2132
6CFK|1|1A|C|2133
6CFK|1|1A|G|2134
6CFK|1|1A|U|2135
6CFK|1|1A|A|2136
6CFK|1|1A|G|2137
6CFK|1|1A|G|2138
6CFK|1|1A|A|2139
6CFK|1|1A|U|2140
6CFK|1|1A|A|2141
6CFK|1|1A|G|2142
*
6CFK|1|1A|C|2200
6CFK|1|1A|C|2201

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains