IL_6CFK_086

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6CFK|1|1A|U|2154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_086 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.1399

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|1A|C|2151
6CFK|1|1A|U|2152
6CFK|1|1A|G|2153
6CFK|1|1A|U|2154
6CFK|1|1A|G|2155
6CFK|1|1A|A|2156
6CFK|1|1A|A|2157
6CFK|1|1A|C|2158
*
6CFK|1|1A|G|2177
6CFK|1|1A|G|2178
6CFK|1|1A|G|2179
6CFK|1|1A|A|2180
6CFK|1|1A|G|2181

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains