IL_6CFK_148

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_148 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0744

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6CFK|1|1a|G|887
6CFK|1|1a|G|888
6CFK|1|1a|A|889
6CFK|1|1a|G|890
6CFK|1|1a|U|891
6CFK|1|1a|A|892
6CFK|1|1a|C|893
6CFK|1|1a|G|894
*
6CFK|1|1a|U|905
6CFK|1|1a|G|906
6CFK|1|1a|A|907
6CFK|1|1a|A|908
6CFK|1|1a|A|909
6CFK|1|1a|C|910

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1l

30S ribosomal protein S12

Chain 1q

30S ribosomal protein S17