IL_6CFK_151

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6CFK|1|1a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_151 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0936

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6CFK|1|1a|G|933
6CFK|1|1a|C|934
6CFK|1|1a|A|935
*
6CFK|1|1a|U|1380
6CFK|1|1a|U|1381
6CFK|1|1a|C|1382
6CFK|1|1a|C|1383
6CFK|1|1a|C|1384

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9

Chain 1y

Ribosome-associated inhibitor A