IL_6CFK_188

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

6CFK|1|2A|U|504, 6CFK|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_188 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0426

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6CFK|1|2A|G|481
6CFK|1|2A|A|482
6CFK|1|2A|A|483
6CFK|1|2A|C|484
*
6CFK|1|2A|G|496
6CFK|1|2A|A|497
6CFK|1|2A|G|498
6CFK|1|2A|U|499
6CFK|1|2A|G|500
6CFK|1|2A|A|501
6CFK|1|2A|A|502
6CFK|1|2A|A|503
6CFK|1|2A|U|504
6CFK|1|2A|A|505
6CFK|1|2A|G|506
6CFK|1|2A|A|507
6CFK|1|2A|G|508
6CFK|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24