IL_6CFK_192

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6CFK|1|2A|G|801, 6CFK|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_192 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0399

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6CFK|1|2A|G|674
6CFK|1|2A|A|675
6CFK|1|2A|A|676
6CFK|1|2A|A|677
6CFK|1|2A|C|678
*
6CFK|1|2A|G|799
6CFK|1|2A|A|800
6CFK|1|2A|G|801
6CFK|1|2A|A|802
6CFK|1|2A|U|803
6CFK|1|2A|A|804
6CFK|1|2A|G|805
6CFK|1|2A|C|806

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15