3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
6CFK|1|2A|U|1026, 6CFK|1|2A|A|1127, 6CFK|1|2A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFK_213 not in the Motif Atlas
Geometric match to IL_7RQB_040
Geometric discrepancy: 0.0426
The information below is about IL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6CFK|1|2A|G|1024
6CFK|1|2A|G|1025
6CFK|1|2A|U|1026
6CFK|1|2A|A|1027
6CFK|1|2A|A|1028
6CFK|1|2A|A|1029
6CFK|1|2A|G|1030
*
6CFK|1|2A|C|1124
6CFK|1|2A|G|1125
6CFK|1|2A|A|1126
6CFK|1|2A|A|1127
6CFK|1|2A|A|1128
6CFK|1|2A|A|1129
6CFK|1|2A|U|1130
6CFK|1|2A|G|1131
6CFK|1|2A|A|1132
6CFK|1|2A|U|1133
6CFK|1|2A|C|1135
6CFK|1|2A|G|1136
6CFK|1|2A|G|1137
6CFK|1|2A|G|1138
6CFK|1|2A|G|1139
6CFK|1|2A|C|1140

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 29
50S ribosomal protein L36
Chain 2B
5S ribosomal RNA; 5S rRNA
Chain 2E
50S ribosomal protein L3
Chain 2N
50S ribosomal protein L13
Chain 2Q
50S ribosomal protein L16

Coloring options:


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