3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
6CFK|1|2A|A|1379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFK_223 not in the Motif Atlas
Homologous match to IL_7RQB_052
Geometric discrepancy: 0.054
The information below is about IL_7RQB_052
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

6CFK|1|2A|C|1351
6CFK|1|2A|U|1352
6CFK|1|2A|A|1353
6CFK|1|2A|A|1354
6CFK|1|2A|G|1355
*
6CFK|1|2A|C|1376
6CFK|1|2A|G|1377
6CFK|1|2A|A|1378
6CFK|1|2A|A|1379
6CFK|1|2A|G|1380

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34
Chain 2D
50S ribosomal protein L2

Coloring options:


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