IL_6CFK_257

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_257 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.2448

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|2A|G|2124
6CFK|1|2A|G|2125
6CFK|1|2A|A|2126
6CFK|1|2A|G|2127
*
6CFK|1|2A|C|2161
6CFK|1|2A|G|2162
6CFK|1|2A|C|2163
6CFK|1|2A|C|2164
6CFK|1|2A|G|2165
6CFK|1|2A|G|2166
6CFK|1|2A|U|2167
6CFK|1|2A|G|2168
6CFK|1|2A|A|2169
6CFK|1|2A|A|2170
6CFK|1|2A|A|2171
6CFK|1|2A|U|2172
6CFK|1|2A|A|2173
6CFK|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains