IL_6CFK_273

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6CFK|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_273 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0505

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6CFK|1|2A|U|2636
6CFK|1|2A|U|2637
6CFK|1|2A|G|2638
6CFK|1|2A|A|2639
6CFK|1|2A|G|2640
*
6CFK|1|2A|C|2774
6CFK|1|2A|A|2775
6CFK|1|2A|A|2776
6CFK|1|2A|G|2777
6CFK|1|2A|A|2778
6CFK|1|2A|U|2779
6CFK|1|2A|G|2780
6CFK|1|2A|A|2781
6CFK|1|2A|G|2782

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13