IL_6CFK_293

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6CFK|1|2a|G|129|||A, 6CFK|1|2a|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_293 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.0983

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6CFK|1|2a|U|129
6CFK|1|2a|G|129|||A
6CFK|1|2a|A|130
6CFK|1|2a|C|131
*
6CFK|1|2a|G|231
6CFK|1|2a|G|232

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17

Chain 2t

30S ribosomal protein S20