IL_6CFK_356

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6CFK|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFK_356 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0694

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6CFK|1|2A|C|844
6CFK|1|2A|G|845
6CFK|1|2A|C|846
6CFK|1|2A|U|847
6CFK|1|2A|G|848
6CFK|1|2A|A|849
6CFK|1|2A|C|850
*
6CFK|1|2A|G|927
6CFK|1|2A|G|928
6CFK|1|2A|U|930
6CFK|1|2A|G|931
6CFK|1|2A|G|932
6CFK|1|2A|A|933
6CFK|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30