3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFK_374 not in the Motif Atlas
Homologous match to IL_6CZR_408
Geometric discrepancy: 0.2469
The information below is about IL_6CZR_408
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.2
Basepair signature
cWW-tSH-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
3

Unit IDs

6CFK|1|2a|U|605
6CFK|1|2a|G|606
6CFK|1|2a|A|607
6CFK|1|2a|A|608
6CFK|1|2a|A|609
6CFK|1|2a|G|610
6CFK|1|2a|A|611
6CFK|1|2a|C|612
*
6CFK|1|2a|G|628
6CFK|1|2a|G|629
6CFK|1|2a|G|630
6CFK|1|2a|G|631
6CFK|1|2a|A|632
6CFK|1|2a|G|633

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2d
30S ribosomal protein S4
Chain 2h
30S ribosomal protein S8
Chain 2p
30S ribosomal protein S16
Chain 2q
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2046 s