Motif IL_78349.2 Version IL_78349.2 of this group appears in releases 3.88 to 3.95

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14	1-14	2-13	7-10	7-11	8-9
1	IL_5J7L_030	5J7L	0.4951	AA	SSU rRNA	U	605	G	606	A	607	A	608	A	609	U	610	C	611	C	612	*	G	628	A	629	A	630	C	631	U	632	G	633	cWW		cWWa		cWW
2	IL_4LFB_026	4LFB	0.0000	A	SSU rRNA	U	605	G	606	A	607	A	608	A	609	G	610	A	611	C	612	*	G	628	G	629	G	630	G	631	A	632	G	633	cWW	tSH			cWW
3	IL_6CZR_408	6CZR	0.2637	1a	SSU rRNA	U	589	G	590	A	591	A	592	A	593	G	594	A	595	C	596	*	G	612	G	613	G	614	G	615	A	616	G	617	ncWW	tSH		ncWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAAAGAC*GGGGAG	2
UGAAAUCC*GAACUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAAGA*GGGA	2
GAAAUC*AACU	1

Release history

Release	3.88	3.89	3.90	3.91	3.92	3.93	3.94	3.95
Date	2024-09-11	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-tSH-L-R-L-R-L-R-L-cWW-L
Heat map statistics: Min 0.26 | Avg 0.29 | Max 0.56

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