IL_6CFL_017

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6CFL|1|1A|G|848, 6CFL|1|1A|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_017 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0332

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6CFL|1|1A|G|721
6CFL|1|1A|A|722
6CFL|1|1A|A|723
6CFL|1|1A|A|724
6CFL|1|1A|C|725
*
6CFL|1|1A|G|846
6CFL|1|1A|A|847
6CFL|1|1A|G|848
6CFL|1|1A|A|849
6CFL|1|1A|U|850
6CFL|1|1A|A|851
6CFL|1|1A|G|852
6CFL|1|1A|C|853

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15