IL_6CFL_046

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6CFL|1|1A|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_046 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0284

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6CFL|1|1A|C|1253
6CFL|1|1A|G|1254
6CFL|1|1A|A|1255
6CFL|1|1A|U|1256
6CFL|1|1A|G|1257
6CFL|1|1A|A|1258
6CFL|1|1A|A|1259
6CFL|1|1A|G|1260
*
6CFL|1|1A|U|1280
6CFL|1|1A|G|1281
6CFL|1|1A|G|1282
6CFL|1|1A|A|1283
6CFL|1|1A|G|1284

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S Ribosomal Protein L20