IL_6CFL_084

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_084 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3856

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6CFL|1|1A|G|2132
6CFL|1|1A|C|2133
6CFL|1|1A|G|2134
6CFL|1|1A|U|2135
6CFL|1|1A|A|2136
6CFL|1|1A|G|2137
6CFL|1|1A|G|2138
6CFL|1|1A|A|2139
6CFL|1|1A|U|2140
6CFL|1|1A|A|2141
6CFL|1|1A|G|2142
*
6CFL|1|1A|C|2200
6CFL|1|1A|C|2201

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains