IL_6CFL_085

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_085 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.1633

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|1A|G|2146
6CFL|1|1A|G|2147
6CFL|1|1A|A|2148
6CFL|1|1A|G|2149
*
6CFL|1|1A|C|2183
6CFL|1|1A|G|2184
6CFL|1|1A|C|2185
6CFL|1|1A|C|2186
6CFL|1|1A|G|2187
6CFL|1|1A|G|2188
6CFL|1|1A|U|2189
6CFL|1|1A|G|2190
6CFL|1|1A|A|2191
6CFL|1|1A|A|2192
6CFL|1|1A|A|2193
6CFL|1|1A|U|2194
6CFL|1|1A|A|2195
6CFL|1|1A|C|2196

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains