3D structure

PDB id
6CFL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFL_102 not in the Motif Atlas
Homologous match to IL_7RQB_103
Geometric discrepancy: 0.0423
The information below is about IL_7RQB_103
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.1
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

6CFL|1|1A|C|2664
6CFL|1|1A|U|2665
6CFL|1|1A|A|2666
6CFL|1|1A|G|2667
6CFL|1|1A|U|2668
6CFL|1|1A|A|2669
6CFL|1|1A|C|2670
*
6CFL|1|1A|G|2675
6CFL|1|1A|G|2676
6CFL|1|1A|A|2677
6CFL|1|1A|C|2678
6CFL|1|1A|C|2679
6CFL|1|1A|G|2680

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1H
50S ribosomal protein L6

Coloring options:


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