IL_6CFL_140

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGAAAGAC*GGGGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_140 not in the Motif Atlas

Homologous match to IL_4LFB_026

Geometric discrepancy: 0.244

The information below is about IL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6CFL|1|1a|U|605
6CFL|1|1a|G|606
6CFL|1|1a|A|607
6CFL|1|1a|A|608
6CFL|1|1a|A|609
6CFL|1|1a|G|610
6CFL|1|1a|A|611
6CFL|1|1a|C|612
*
6CFL|1|1a|G|628
6CFL|1|1a|G|629
6CFL|1|1a|G|630
6CFL|1|1a|G|631
6CFL|1|1a|A|632
6CFL|1|1a|G|633

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1h

30S Ribosomal Protein S8

Chain 1p

30S ribosomal protein S16

Chain 1q

30S ribosomal protein S17