IL_6CFL_188
3D structure
- PDB id
- 6CFL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 6CFL|1|2A|U|504, 6CFL|1|2A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFL_188 not in the Motif Atlas
- Homologous match to IL_7RQB_014
- Geometric discrepancy: 0.0421
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6CFL|1|2A|G|481
6CFL|1|2A|A|482
6CFL|1|2A|A|483
6CFL|1|2A|C|484
*
6CFL|1|2A|G|496
6CFL|1|2A|A|497
6CFL|1|2A|G|498
6CFL|1|2A|U|499
6CFL|1|2A|G|500
6CFL|1|2A|A|501
6CFL|1|2A|A|502
6CFL|1|2A|A|503
6CFL|1|2A|U|504
6CFL|1|2A|A|505
6CFL|1|2A|G|506
6CFL|1|2A|A|507
6CFL|1|2A|G|508
6CFL|1|2A|C|509
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2W
- 50S ribosomal protein L22
- Chain 2Y
- 50S Ribosomal Protein L24
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