IL_6CFL_247

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_247 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0533

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6CFL|1|2A|U|1851
6CFL|1|2A|C|1852
6CFL|1|2A|A|1853
6CFL|1|2A|A|1854
6CFL|1|2A|G|1855
*
6CFL|1|2A|C|1887
6CFL|1|2A|G|1888
6CFL|1|2A|A|1889
6CFL|1|2A|A|1890
6CFL|1|2A|G|1891

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains