IL_6CFL_259

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_259 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.2483

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|2A|G|2124
6CFL|1|2A|G|2125
6CFL|1|2A|A|2126
6CFL|1|2A|G|2127
*
6CFL|1|2A|C|2161
6CFL|1|2A|G|2162
6CFL|1|2A|C|2163
6CFL|1|2A|C|2164
6CFL|1|2A|G|2165
6CFL|1|2A|G|2166
6CFL|1|2A|U|2167
6CFL|1|2A|G|2168
6CFL|1|2A|A|2169
6CFL|1|2A|A|2170
6CFL|1|2A|A|2171
6CFL|1|2A|U|2172
6CFL|1|2A|A|2173
6CFL|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains