IL_6CFL_276

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_276 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0752

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6CFL|1|2A|C|2652
6CFL|1|2A|U|2653
6CFL|1|2A|A|2654
6CFL|1|2A|G|2655
6CFL|1|2A|U|2656
6CFL|1|2A|A|2657
6CFL|1|2A|C|2658
*
6CFL|1|2A|G|2663
6CFL|1|2A|G|2664
6CFL|1|2A|A|2665
6CFL|1|2A|C|2666
6CFL|1|2A|C|2667
6CFL|1|2A|G|2668

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6