3D structure

PDB id
6CFL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
6CFL|1|2a|U|244, 6CFL|1|2a|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFL_299 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.0714
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6CFL|1|2a|C|242
6CFL|1|2a|A|243
6CFL|1|2a|U|244
6CFL|1|2a|C|245
6CFL|1|2a|A|246
6CFL|1|2a|G|247
*
6CFL|1|2a|C|277
6CFL|1|2a|G|278
6CFL|1|2a|A|279
6CFL|1|2a|C|280
6CFL|1|2a|G|281
6CFL|1|2a|A|282
6CFL|1|2a|C|283
6CFL|1|2a|G|284

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2l
30S ribosomal protein S12
Chain 2q
30S ribosomal protein S17

Coloring options:


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