IL_6CFL_319

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6CFL|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_319 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1006

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6CFL|1|2a|G|683
6CFL|1|2a|A|684
6CFL|1|2a|G|685
6CFL|1|2a|U|686
6CFL|1|2a|A|687
6CFL|1|2a|G|688
*
6CFL|1|2a|C|699
6CFL|1|2a|G|700
6CFL|1|2a|C|701
6CFL|1|2a|A|702
6CFL|1|2a|G|703
6CFL|1|2a|A|704
6CFL|1|2a|U|705
6CFL|1|2a|A|706
6CFL|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11