IL_6CFL_322

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_322 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0612

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6CFL|1|2a|G|887
6CFL|1|2a|G|888
6CFL|1|2a|A|889
6CFL|1|2a|G|890
6CFL|1|2a|U|891
6CFL|1|2a|A|892
6CFL|1|2a|C|893
6CFL|1|2a|G|894
*
6CFL|1|2a|U|905
6CFL|1|2a|G|906
6CFL|1|2a|A|907
6CFL|1|2a|A|908
6CFL|1|2a|A|909
6CFL|1|2a|C|910

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17