IL_6CFL_342

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_342 not in the Motif Atlas

Homologous match to IL_5J7L_060

Geometric discrepancy: 0.2725

The information below is about IL_5J7L_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|2a|G|1405
6CFL|1|2a|U|1406
6CFL|1|2a|5MC|1407
6CFL|1|2a|A|1408
6CFL|1|2a|C|1409
*
6CFL|1|2a|G|1491
6CFL|1|2a|A|1492
6CFL|1|2a|A|1493
6CFL|1|2a|G|1494
6CFL|1|2a|U|1495
6CFL|1|2a|C|1496

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2l

30S ribosomal protein S12

Chain 2y

Protein Y