IL_6CFL_372

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6CFL|1|2A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_372 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.4174

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6CFL|1|2A|C|1043
6CFL|1|2A|G|1044
6CFL|1|2A|A|1045
6CFL|1|2A|A|1046
6CFL|1|2A|G|1047
6CFL|1|2A|A|1048
6CFL|1|2A|C|1049
6CFL|1|2A|A|1050
6CFL|1|2A|G|1051
*
6CFL|1|2A|U|1108
6CFL|1|2A|C|1109
6CFL|1|2A|G|1110
6CFL|1|2A|A|1111
6CFL|1|2A|G|1112

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6