IL_6CK4_007

3D structure

PDB id

6CK4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUC*GAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CK4_007 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.0914

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_44025.1

Basepair signature

cWW-cWW-tHS-cSH-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6CK4|1|B|G|16
6CK4|1|B|G|17
6CK4|1|B|U|18
6CK4|1|B|U|19
6CK4|1|B|C|20
*
6CK4|1|B|G|42
6CK4|1|B|A|43
6CK4|1|B|C|44

Current chains

Chain B

PRPP riboswitch

Nearby chains