6CK4 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6CK4_003 | 1/A/84:92 | T-loop related | geometric HL_6DLR_003 HL_36455.1 | |
| HL_6CK4_006 | 1/B/84:92 | T-loop related | geometric HL_6DLR_003 HL_36455.1 | |
| HL_6CK4_009 | 1/C/84:92 | T-loop related | geometric HL_6DLR_003 HL_36455.1 | |
| HL_6CK4_012 | 1/D/84:92 | T-loop related | geometric HL_6DLR_003 HL_36455.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6CK4_001 | No text annotation | ||
| HL_6CK4_002 | No text annotation | ||
| HL_6CK4_004 | No text annotation | ||
| HL_6CK4_005 | No text annotation | ||
| HL_6CK4_007 | No text annotation | ||
| HL_6CK4_008 | No text annotation | ||
| HL_6CK4_010 | No text annotation | ||
| HL_6CK4_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6CK4_001 | 1/A/12:15, 1/A/45:50 | tSH-tHW | geometric IL_5J7L_297 NA | |
| IL_6CK4_002 | 1/A/16:20, 1/A/42:44 | 8-nt loop receptor | geometric IL_6CK5_002 IL_44025.1 | |
| IL_6CK4_003 | 1/A/21:22, 1/A/39:41 | Single bulged C | geometric IL_3HHN_003 IL_05642.1 | |
| IL_6CK4_021 | 1/A/21:23, 1/A/36:41 | No text annotation | geometric IL_6CK5_011 IL_32983.1 | |
| IL_6CK4_004 | 1/A/22:23, 1/A/36:39 | Multiple bulged bases | geometric IL_1FUF_003 NA | |
| IL_6CK4_006 | 1/B/12:15, 1/B/45:50 | tSH-tHW | geometric IL_6DLR_001 IL_73578.1 | |
| IL_6CK4_007 | 1/B/16:20, 1/B/42:44 | 8-nt loop receptor | geometric IL_6CK5_002 IL_44025.1 | |
| IL_6CK4_008 | 1/B/21:22, 1/B/39:41 | Single bulged C | geometric IL_3HHN_003 IL_05642.1 | |
| IL_6CK4_022 | 1/B/21:23, 1/B/36:41 | No text annotation | geometric IL_6CK5_011 IL_32983.1 | |
| IL_6CK4_023 | 1/B/22:23, 1/B/36:39 | Multiple bulged bases | geometric IL_1FUF_002 NA | |
| IL_6CK4_010 | 1/B/80:82, 1/B/94:97 | Isolated non-canonical cWW pair | geometric IL_7D7W_003 IL_30229.1 | |
| IL_6CK4_011 | 1/C/12:15, 1/C/45:50 | tSH-tHW | geometric IL_5J7L_297 NA | |
| IL_6CK4_012 | 1/C/16:20, 1/C/42:44 | 8-nt loop receptor | geometric IL_6CK5_002 IL_44025.1 | |
| IL_6CK4_013 | 1/C/21:22, 1/C/39:41 | Single bulged C | geometric IL_3HHN_003 IL_05642.1 | |
| IL_6CK4_024 | 1/C/21:23, 1/C/36:41 | No text annotation | ||
| IL_6CK4_016 | 1/D/12:15, 1/D/45:50 | tSH-tHW | geometric IL_6DLR_001 IL_73578.1 | |
| IL_6CK4_017 | 1/D/16:20, 1/D/42:44 | 8-nt loop receptor | geometric IL_6CK5_002 IL_44025.1 | |
| IL_6CK4_018 | 1/D/21:22, 1/D/39:41 | Single bulged C | geometric IL_3HHN_003 IL_05642.1 | |
| IL_6CK4_025 | 1/D/21:23, 1/D/36:41 | No text annotation | geometric IL_6CK5_011 IL_32983.1 | |
| IL_6CK4_019 | 1/D/22:23, 1/D/36:39 | Multiple bulged bases | geometric IL_1FUF_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6CK4_005 | Isolated non-canonical cWW pair | ||
| IL_6CK4_009 | Isolated non-canonical cWW with bulges | ||
| IL_6CK4_014 | Multiple bulged bases | ||
| IL_6CK4_015 | No text annotation | ||
| IL_6CK4_020 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_6CK4_001 | 1/A/5:7, 1/A/55:56, 1/A/73:77, 1/A/100:106 | No text annotation | ||
| J4_6CK4_002 | 1/C/5:7, 1/C/55:56, 1/C/73:77, 1/C/100:106 | No text annotation |
Problematic loops
No problematic loops
Coloring options: