3D structure

PDB id
6CK5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
PRPP riboswitch from T. mathranii bound to PRPP
Experimental method
X-RAY DIFFRACTION
Resolution
2.49 Å

Loop

Sequence
CUAG*CGAGCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CK5_006 not in the Motif Atlas
Geometric match to IL_6CK5_001
Geometric discrepancy: 0.0681
The information below is about IL_6CK5_001
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_21200.1
Basepair signature
cWW-tSH-tHW-L-cWW-L
Number of instances in this motif group
6

Unit IDs

6CK5|1|B|C|12
6CK5|1|B|U|13
6CK5|1|B|A|14
6CK5|1|B|G|15
*
6CK5|1|B|C|45
6CK5|1|B|G|46
6CK5|1|B|A|47
6CK5|1|B|G|48
6CK5|1|B|C|49
6CK5|1|B|G|50

Current chains

Chain B
PRPP riboswitch

Nearby chains

Chain A
Guanidine-I riboswitch

Coloring options:


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