IL_6CMN_001

3D structure

PDB id

6CMN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-Crystal Structure of HIV-1 TAR Bound to Lab-Evolved RRM TBP6.7

Experimental method

X-RAY DIFFRACTION

Resolution

1.8 Å

Loop

Sequence

AUCUG*CU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_13730.6

Basepair signature

cWW-cWW

Number of instances in this motif group

54

Unit IDs

6CMN|1|D|A|22
6CMN|1|D|U|23
6CMN|1|D|C|24
6CMN|1|D|U|25
6CMN|1|D|G|26
*
6CMN|1|D|C|39
6CMN|1|D|U|40

Current chains

Chain D

Trans-Activation Response RNA Element

Nearby chains

Chain A

TAR-Binding Protein 6.7