Motif IL_13730.6 Version IL_13730.6 of this group appears in releases 3.28 to 3.36
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4Y4O_273 | 4Y4O | 0.6628 | 2 | Multiple bulged bases | 2A | LSU rRNA | C | 2512 | G | 2513 | * | C | 2571 | G | 2574 | cWW | cWW |
2 | IL_4IOA_092 | 4IOA | 0.6637 | 2 | Multiple bulged bases | X | LSU rRNA | C | 2491 | G | 2492 | * | C | 2550 | G | 2553 | cWW | cWW |
3 | IL_3IGI_013 | 3IGI | 0.6201 | 2 | Multiple bulged bases | A | Group IIC intron | U | 365 | A | 366 | * | U | 375 | G | 378 | cWW | cWW |
4 | IL_1KXK_003 | 1KXK | 0.6371 | 2 | Multiple bulged bases | A | ai5g group II Self-splicing intron | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW |
5 | IL_1NBS_009 | 1NBS | 0.4390 | 2 | Major groove intercalation | B | RNase P class B | U | 228 | A | 231 | * | U | 181 | G | 182 | cWW | cWW |
6 | IL_1U9S_003 | 1U9S | 0.3480 | 2 | Major groove intercalation | A | RIBONUCLEASE P | C | 224 | A | 227 | * | U | 116 | G | 117 | cWW | cWW |
7 | IL_1NTA_001 | 1NTA | 0.3429 | 1 | Stack outside cWW | A+B | RNA (22-mer) + RNA (18-mer) | C | 5 | C | 7 | * | G | 114 | G | 115 | cWW | cWW |
8 | IL_5J7L_349 | 5J7L | 0.4364 | 2 | Multiple bulged bases | DA | LSU rRNA | U | 2695 | U | 2696 | * | A | 2711 | G | 2714 | cWW | cWW |
9 | IL_4WF9_103 | 4WF9 | 0.4307 | 2 | Multiple bulged bases | X | LSU rRNA | U | 2722 | U | 2723 | * | A | 2738 | G | 2741 | cWW | cWW |
10 | IL_5TBW_119 | 5TBW | 0.3994 | 2 | Multiple bulged bases | 1 | LSU rRNA | C | 3063 | U | 3064 | * | A | 3077 | G | 3080 | cWW | cWW |
11 | IL_5TBW_109 | 5TBW | 0.4937 | 2 | Multiple bulged bases | 1 | LSU rRNA | C | 2881 | U | 2882 | * | A | 2940 | G | 2943 | cWW | cWW |
12 | IL_4V9F_088 | 4V9F | 0.5219 | 2 | Multiple bulged bases | 0 | LSU rRNA | C | 2547 | C | 2548 | * | G | 2606 | G | 2609 | cWW | cWW |
13 | IL_5TBW_136 | 5TBW | 0.5292 | 2 | Multiple bulged bases | 1 | LSU rRNA | C | 3349 | C | 3350 | * | G | 3353 | G | 3356 | ncWW | cWW |
14 | IL_1U9S_008 | 1U9S | 0.3264 | 1 | Stack outside cWW | A | RIBONUCLEASE P | G | 217 | C | 219 | * | G | 195 | C | 196 | cWW | cWW |
15 | IL_6JXM_001 | 6JXM | 0.4299 | 2 | Multiple bulged bases | B | tRNA | G | 53 | U | 56 | * | A | 34 | C | 35 | cWW | cWW |
16 | IL_5T83_004 | 5T83 | 0.2335 | 2 | Multiple bulged bases | A | Guanidine-I riboswitch | G | 33 | C | 36 | * | G | 22 | C | 23 | cWW | cWW |
17 | IL_6DLR_004 | 6DLR | 0.2318 | 2 | Multiple bulged bases | A | Guanidine-I riboswitch | G | 36 | C | 39 | * | G | 22 | C | 23 | cWW | cWW |
18 | IL_5WTK_001 | 5WTK | 0.1929 | 2 | Multiple bulged bases | B | RNA (58-MER) | G | 20 | U | 23 | * | A | 3 | C | 4 | cWW | cWW |
19 | IL_4V88_392 | 4V88 | 0.2009 | 2 | Multiple bulged bases | A6 | SSU rRNA | U | 113 | U | 116 | * | A | 300 | A | 301 | cWW | cWW |
20 | IL_5XWP_001 | 5XWP | 0.2975 | 2 | Multiple bulged bases | C | RNA (59-MER) | G | 22 | U | 25 | * | A | 5 | C | 6 | cWW | cWW |
21 | IL_5WLH_001 | 5WLH | 0.2359 | 2 | Multiple bulged bases | B | pre-crRNA | C | -7 | U | -4 | * | A | -23 | G | -22 | cWW | cWW |
22 | IL_5W1H_001 | 5W1H | 0.2476 | 2 | Multiple bulged bases | B | mature crRNA | C | -7 | U | -4 | * | A | -23 | G | -22 | cWW | cWW |
23 | IL_6CMN_001 | 6CMN | 0.1643 | 3 | Multiple bulged bases | D | Trans-Activation Response RNA Element | A | 22 | G | 26 | * | C | 39 | U | 40 | cWW | cWW |
24 | IL_5LYS_007 | 5LYS | 0.1500 | 2 | Major groove intercalation | B | 7SK RNA | A | 39 | G | 42 | * | C | 67 | U | 68 | cWW | cWW |
25 | IL_1XOK_001 | 1XOK | 0.1492 | 2 | Major groove intercalation | A | alfalfa mosaic virus RNA 3' UTR | A | 864 | G | 867 | * | C | 846 | U | 847 | cWW | cWW |
26 | IL_1XOK_002 | 1XOK | 0.1137 | 2 | Major groove intercalation | B+A | alfalfa mosaic virus RNA 3' UTR | G | 877 | G | 880 | * | C | 868 | C | 869 | cWW | cWW |
27 | IL_6IV9_001 | 6IV9 | 0.0000 | 2 | Multiple bulged bases | B | crRNA (50-MER) | G | -9 | U | -6 | * | A | -29 | C | -28 | cWW | cWW |
28 | IL_5LYS_006 | 5LYS | 0.1137 | 2 | Stack outside cWW | B | 7SK RNA | G | 70 | G | 73 | * | C | 36 | C | 37 | cWW | cWW |
29 | IL_4KZD_006 | 4KZD | 0.1851 | 2 | Stack outside cWW | R | RNA (84-MER) | G | 49 | G | 52 | * | C | 30 | C | 31 | cWW | cWW |
30 | IL_5OB3_004 | 5OB3 | 0.2280 | 2 | Multiple bulged bases | A | RNA aptamer (69-MER) | G | 41 | G | 44 | * | C | 23 | C | 24 | cWW | cWW |
31 | IL_1R3E_001 | 1R3E | 0.3261 | 3 | Multiple bulged bases | E+D | RNA (17-mer) | C | 415 | C | 416 | * | G | 408 | G | 412 | cWW | cWW |
32 | IL_1R3E_002 | 1R3E | 0.2584 | 3 | Multiple bulged bases | E+D | RNA (17-mer) | G | 408 | G | 412 | * | C | 415 | C | 416 | cWW | cWW |
33 | IL_387D_001 | 387D | 0.1906 | 2 | Multiple bulged bases | A | RNA Pseudoknot | G | 15 | A | 18 | * | U | 1 | C | 2 | cWW | cWW |
34 | IL_4WF9_071 | 4WF9 | 0.3310 | 2 | Major groove intercalation | X | LSU rRNA | U | 1925 | A | 1928 | * | U | 1868 | G | 1869 | cWW | cWW |
35 | IL_4IOA_067 | 4IOA | 0.3650 | 2 | Multiple bulged bases | X | LSU rRNA | U | 1881 | A | 1884 | * | U | 1833 | G | 1834 | cWW | cWW |
36 | IL_6CZR_119 | 6CZR | 0.3842 | 2 | Multiple bulged bases | 1a | SSU rRNA | U | 123 | C | 126 | * | G | 227 | G | 228 | cWW | cWW |
37 | IL_4LFB_007 | 4LFB | 0.3624 | 2 | Multiple bulged bases | A | SSU rRNA | U | 129 | C | 131 | * | G | 231 | G | 232 | cWW | cWW |
38 | IL_6JQ6_001 | 6JQ6 | 0.3116 | 1 | Stack outside cWW | U | Hatchet ribozyme | U | 62||||11_555 | C | 64||||11_555 | * | G | 31||||11_555 | G | 32||||11_555 | cWW | cWW |
39 | IL_6JQ6_004 | 6JQ6 | 0.3116 | 1 | Stack outside cWW | U | Hatchet ribozyme | U | 62 | C | 64 | * | G | 31 | G | 32 | cWW | cWW |
40 | IL_3IWN_004 | 3IWN | 0.3254 | 2 | Multiple bulged bases | A | C-di-GMP riboswitch | U | 76 | C | 79 | * | G | 46 | G | 47 | cWW | cWW |
41 | IL_3MXH_004 | 3MXH | 0.3447 | 2 | Multiple bulged bases | R | c-di-GMP riboswitch | U | 81 | C | 84 | * | G | 56 | G | 57 | cWW | cWW |
42 | IL_1FUF_002 | 1FUF | 0.3820 | 2 | Multiple bulged bases | A+B | RNA (14-mer) | U | 5 | C | 8 | * | G | 23 | G | 24 | cWW | cWW |
43 | IL_1FUF_003 | 1FUF | 0.3960 | 2 | Multiple bulged bases | B+A | RNA (14-mer) | U | 19 | C | 22 | * | G | 9 | G | 10 | cWW | cWW |
44 | IL_6JQ5_001 | 6JQ5 | 0.4723 | 1 | Stack outside cWW | A | Hatchet ribozyme | U | 62 | C | 64 | * | G | 31 | G | 32 | cWW | cWW |
45 | IL_4IOA_084 | 4IOA | 0.4503 | 1 | Major groove platform | X | LSU rRNA | U | 2380 | C | 2382 | * | G | 2393 | G | 2394 | cWW | cWW |
46 | IL_5TBW_085 | 5TBW | 0.4201 | 2 | Major groove intercalation | 1 | LSU rRNA | U | 2241 | A | 2244 | * | U | 2200 | G | 2201 | cWW | cWW |
47 | IL_4V9F_067 | 4V9F | 0.4558 | 2 | Major groove intercalation | 0 | LSU rRNA | U | 1939 | A | 1942 | * | U | 1897 | G | 1898 | cWW | cWW |
48 | IL_5J7L_315 | 5J7L | 0.4065 | 2 | Major groove intercalation | DA | LSU rRNA | U | 1898 | A | 1901 | * | U | 1841 | G | 1842 | cWW | cWW |
49 | IL_6CF2_002 | 6CF2 | 0.3417 | 2 | Major groove intercalation | G | RNA (35-MER) | C | 22 | G | 25 | * | C | 10 | G | 11 | cWW | cWW |
50 | IL_6CZR_117 | 6CZR | 0.5095 | 2 | Multiple bulged bases | 1a | SSU rRNA | C | 64 | G | 67 | * | C | 97 | G | 98 | cWW | cWW |
51 | IL_5J7L_005 | 5J7L | 0.5103 | 2 | Multiple bulged bases | AA | SSU rRNA | C | 63 | A | 66 | * | U | 103 | G | 104 | cWW | cWW |
52 | IL_4LFB_005 | 4LFB | 0.5405 | 2 | Multiple bulged bases | A | SSU rRNA | C | 63 | G | 66 | * | C | 103 | G | 104 | cWW | cWW |
53 | IL_4V9F_021 | 4V9F | 0.4804 | 2 | Multiple bulged bases | 0 | LSU rRNA | C | 699 | G | 702 | * | C | 726 | G | 727 | cWW | cWW |
54 | IL_4YAZ_008 | 4YAZ | 0.4836 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | C | 64 | C | 67 | * | G | 51 | G | 52 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAAA*UG | 4 |
UGC*GG | 3 |
CG*CACG | 2 |
GACU*AC | 2 |
CAAU*AG | 2 |
GUUG*CC | 2 |
UGAC*GG | 2 |
UAGC*GG | 2 |
UUUC*GG | 2 |
CGUG*CG | 2 |
UA*UACG | 1 |
UG*CACG | 1 |
CAAA*UG | 1 |
CGC*GG | 1 |
UU*ACUG | 1 |
UU*AUAG | 1 |
CU*AUUG | 1 |
CU*AACG | 1 |
CC*GUCG | 1 |
CC*GUUG | 1 |
GGC*GC | 1 |
GAUU*AC | 1 |
GGUC*GC | 1 |
GGAC*GC | 1 |
UCGU*AA | 1 |
AUCUG*CU | 1 |
AUUG*CU | 1 |
AAUG*CU | 1 |
GAUG*CC | 1 |
GUCU*AC | 1 |
GCUG*CC | 1 |
CC*GUUCG | 1 |
GUUCG*CC | 1 |
GGAA*UC | 1 |
UGAA*UG | 1 |
UAC*GG | 1 |
UCAA*UG | 1 |
CUGG*CG | 1 |
CGAA*UG | 1 |
CAUG*CG | 1 |
CAGC*GG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA* | 7 |
GA* | 6 |
*AC | 5 |
G* | 5 |
UU* | 5 |
AU* | 4 |
GU* | 3 |
AG* | 3 |
*UU | 2 |
AC* | 2 |
*CU | 1 |
*UA | 1 |
*UC | 1 |
CG* | 1 |
UCU* | 1 |
UC* | 1 |
CU* | 1 |
*UUC | 1 |
UUC* | 1 |
A* | 1 |
CA* | 1 |
UG* | 1 |
Release history
Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 |
---|---|---|---|---|---|---|---|---|---|
Date | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 |
Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (36)
- Major groove intercalation (10)
- Stack outside cWW (7)
- Major groove platform (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.02 | Avg 0.45 | Max 0.99
Coloring options: