IL_6CY0_004
3D structure
- PDB id
- 6CY0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA octamer containing 2'-F, 4'-Cbeta-OMe U.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- AA(UFB)U*AA(UFB)U
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CY0_004 not in the Motif Atlas
- Geometric match to IL_8GLP_244
- Geometric discrepancy: 0.3877
- The information below is about IL_8GLP_244
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
6CY0|1|G|A|3
6CY0|1|G|A|4
6CY0|1|G|UFB|5
6CY0|1|G|U|6
*
6CY0|1|H|A|3
6CY0|1|H|A|4
6CY0|1|H|UFB|5
6CY0|1|H|U|6
Current chains
- Chain G
- RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')
- Chain H
- RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')
Nearby chains
- Chain E
- RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')
- Chain F
- RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')
Coloring options: