IL_6CZR_017

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6CZR|1|1A|G|847, 6CZR|1|1A|G|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_017 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1104

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6CZR|1|1A|G|720
6CZR|1|1A|A|721
6CZR|1|1A|A|722
6CZR|1|1A|A|723
6CZR|1|1A|C|724
*
6CZR|1|1A|G|845
6CZR|1|1A|A|846
6CZR|1|1A|G|847
6CZR|1|1A|A|848
6CZR|1|1A|U|849
6CZR|1|1A|A|850
6CZR|1|1A|G|851
6CZR|1|1A|C|852

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15