IL_6CZR_031

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGGG*CCUAC

Length

9 nucleotides

Bulged bases

6CZR|1|1A|A|941

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_031 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2852

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6CZR|1|1A|G|926
6CZR|1|1A|G|927
6CZR|1|1A|G|928
6CZR|1|1A|G|929
*
6CZR|1|1A|C|938
6CZR|1|1A|C|939
6CZR|1|1A|U|940
6CZR|1|1A|A|941
6CZR|1|1A|C|942

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25