IL_6CZR_033

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6CZR|1|1A|C|1040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_033 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.1545

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6CZR|1|1A|C|1039
6CZR|1|1A|C|1040
6CZR|1|1A|A|1041
*
6CZR|1|1A|U|1204
6CZR|1|1A|G|1205

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 1N

50S ribosomal protein L13

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21