IL_6CZR_042

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6CZR|1|1A|A|1133

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_042 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2383

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

6CZR|1|1A|G|1132
6CZR|1|1A|A|1133
6CZR|1|1A|G|1134
6CZR|1|1A|U|1135
6CZR|1|1A|G|1136
*
6CZR|1|1A|C|1145
6CZR|1|1A|U|1146
6CZR|1|1A|C|1147

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1Q

50S ribosomal protein L16