IL_6CZR_045

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6CZR|1|1A|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_045 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0903

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6CZR|1|1A|C|1252
6CZR|1|1A|G|1253
6CZR|1|1A|A|1254
6CZR|1|1A|U|1255
6CZR|1|1A|G|1256
6CZR|1|1A|A|1257
6CZR|1|1A|A|1258
6CZR|1|1A|G|1259
*
6CZR|1|1A|U|1279
6CZR|1|1A|G|1280
6CZR|1|1A|G|1281
6CZR|1|1A|A|1282
6CZR|1|1A|G|1283

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20