IL_6CZR_050

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6CZR|1|1A|A|1424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_050 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1053

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6CZR|1|1A|C|1396
6CZR|1|1A|U|1397
6CZR|1|1A|A|1398
6CZR|1|1A|A|1399
6CZR|1|1A|G|1400
*
6CZR|1|1A|C|1421
6CZR|1|1A|G|1422
6CZR|1|1A|A|1423
6CZR|1|1A|A|1424
6CZR|1|1A|G|1425

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2