IL_6CZR_096

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6CZR|1|1A|A|2553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_096 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.1377

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6CZR|1|1A|U|2533
6CZR|1|1A|G|2534
*
6CZR|1|1A|C|2551
6CZR|1|1A|A|2552
6CZR|1|1A|A|2553
6CZR|1|1A|G|2554

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1N

50S ribosomal protein L13