3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CZR_100 not in the Motif Atlas
Geometric match to IL_7RQB_103
Geometric discrepancy: 0.1097
The information below is about IL_7RQB_103
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.1
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

6CZR|1|1A|C|2663
6CZR|1|1A|U|2664
6CZR|1|1A|A|2665
6CZR|1|1A|G|2666
6CZR|1|1A|U|2667
6CZR|1|1A|A|2668
6CZR|1|1A|C|2669
*
6CZR|1|1A|G|2674
6CZR|1|1A|G|2675
6CZR|1|1A|A|2676
6CZR|1|1A|C|2677
6CZR|1|1A|C|2678
6CZR|1|1A|G|2679

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1H
50S ribosomal protein L6

Coloring options:


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