IL_6CZR_141

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6CZR|1|1a|A|649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6CZR|1|1a|G|646
6CZR|1|1a|A|647
6CZR|1|1a|G|648
6CZR|1|1a|A|649
6CZR|1|1a|G|650
*
6CZR|1|1a|U|724
6CZR|1|1a|G|725
6CZR|1|1a|G|726
6CZR|1|1a|U|727

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1f

30S ribosomal protein S6

Chain 1o

30S ribosomal protein S15

Chain 1r

30S ribosomal protein S18